Publications

Thomas Malachowski, Keerthivasan Raanin Chandradoss, Ravi Boya, Linda Zhou, Chuanbin Su Ashley L. Cook, Kenneth Pham, Ji Hun Kim, Spencer A. Haws, Han-Seul Ryu, Chunmin Ge, Jennifer M. Luppino, Son C. Nguyen, Katelyn R. Titus, Wanfeng Gong, Owen Wallace, Eric F. Joyce, Hao Wu, Alejandro Rojas, Jennifer E. Phillips-Cremins: Spatially coordinated heterochromatinization of genetically unstable autosomes in fragile X syndrome, Cell, 186(26):5840-5858.e36. doi: 10.1016/j.cell.2023.11.019, 2023

Hyeonjin Lee, Eun Na Kim, Ji-Young Lee, Ji Hun Kim, Ji-Hye Oh, Won-Kyung Kim, Eun Jeong Cho, JinYeong Lim, Sung-Min Chun, Chang Ohk Sung: Characterization of early postzygotic somatic mutations through multi-organ analysis, Journal of Human Genetics, doi : 10.1038/s10038-021-00908-y, 2021

Ji Hun Kim, Mayuri Rege, Jacqueline Valeri, Margaret C. Dunagin, Aryeh Metzger, Katelyn R. Titus, Thomas G. Gilgenast, Wanfeng Gong, Jonathan A. Beagan, Arjun Raj, Jennifer E. Phillips-Cremins, LADL: light-activated dynamic looping for endogenous gene expression control, Nature Methods, doi : 10.1038/s41592-019-0436-5, 2019
- - Highlighted in Esther Landhuis, Technologies to watch in 2020, Nature, doi : doi.org/10.1038/d41586-020-00114-4, 2020
  - Highlighted in Linda Koch, Optoepigenetics for 3D genome engineering, Nature Review Genetics, doi: 10.1038/s41576-019-0154-y
  - Highlighted in Evan M. Lerner, Penn Engineers’ ‘LADL’ Uses Light to Serve Up On-demand Genome Folding, Penn Today, 7/18/19

Paul Kalitsis, Tao Zhang, Ji Hun Kim, Christian F. Nielsen, Kathryn M. Marshall, Damien F. Hudson, Knocking in Multifunctional Gene Tags into SMC Complex Subunits Using Gene Editing. Methods in Molecular Biology, doi: 10.1007/978-1-4939-9520-2_8, 2019

Ji Hun Kim, Katelyn R. Titus, Wanfeng Gong, Jonathan A. Beagan, Zhendong Cao, Jennifer E. Phillips-Cremins, 5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design, Methods, 142, 39-46, doi: 10.1016/j.ymeth.2018.05.005, 2018

Tao Zhang, James R Paulson, Muhammed Bakhrebah, Ji Hun Kim, Cameron Nowell, Paul Kalitsis, Damien F. Hudson, Condensin I and II behavior in interphase nuclei and cells undergoing premature chromosome condensation, Chromosome Research, 24, 243-269, doi:10.1007/s10577-016-9519-7, 2016

Helena Barysz, Ji Hun Kim, Zhuo Angel Chen, Damien F. Hudson, Juri Rappsilber, Dietlind L. Gerloff, William C. Earnshaw, 3D topology of a core SMC2/SMC4 sub-complex of chicken condensin I revealed by cross-linking and molecular modeling Open Biology. 5: 150005.doi: 10.1098/rsob.150005, 2015

Ji Hun Kim, Tao Zhang, Nicholas C. Wong, Nadia Davidson, Jovana Maksimovic, Alicia Oshlack, William C. Earnshaw, Paul Kalitsis, Damien F. Hudson. Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes. Nature Communications, 4, 2537, doi:10.1038/ncomms3537, 2013

Ji Hun Kim, Paul Kalitsis, Mark D. Pertile, Dianna Maglian, Lee Wong, K.H. Andy Choo, Damien F. Hudson. Nucleic Acid: Hybridization. Encyclopedia of Life Science, Wiley, doi: 10.1002/9780470015902.a0003148.pub2, 2012

Lydia C. Green, Paul Kalitsis, Tsz M. Chang, Miri Cipetic, Ji Hun Kim, Owen Marshall, Lynne Turnbull, Cynthia B. Whitchurch, Paola Vagnarelli, Kumiko Samejima, William C. Earnshaw, K.H. Andy Choo, Damien F. Hudson. Contrasting roles of condensin I and condensin II in mitotic chromosome formation. Journal of Cell Science 125, 1591-1604, doi:10.1242/jcs.097790, 2012

Ji Hun Kim, Tsz M. Chang, Alison N. Graham, K.H. Andy Choo, Paul Kalitsis, Damien F. Hudson. Streptavidin-Binding Peptide (SBP)-tagged SMC2 allows single-step affinity fluorescence, blotting or purification of the condensing complex. BMC Biochemistry, 15:50, doi:10.1186/1471-2091-11-50, 2010