The record

Publications.

Papers from the lab and across the PI's career — organized by stage, newest first. * marks corresponding author; bold marks the PI.

Kim Lab · KAIST faculty
2025PNAS

Replication stress-induced nuclear hypertrophy alters chromatin topology and impacts cancer cell fitness

Changgon Kim, Semyeong Hong, Soo Hyeon Ma, Joochan Lee, Sohee Choi, Eunbie Shin, Kippeum Lee, Hee So, Jun Young Kim, You-Me Kim*, Ji Hun Kim*, Joon Kim*
PNAS, 2025, 122(37):e2424709122 · *co-corresponding
↗ doi.org/10.1073/pnas.2424709122
Highlighted inBRIC Notable Korean Scientist
2025Cancer Immunol. Immunother.

Recombinant antibodies from clonally expanded cancer-associated plasma cells

Wonkyung Kim, Ji-Hye Oh, Chae Won Park, Hyori Kim, Young Gwang Kang, Da Eun Oh, Hee Jin Lee, Ji Hun Kim*, Chang Ohk Sung*
Cancer Immunology, Immunotherapy, 2025, 74:201 · *co-corresponding
↗ doi.org/10.1007/s00262-025-04045-9
2024BMB Reports

3D epigenomics and 3D epigenopathies

Kyung-Hwan Lee, Jungyu Kim, Ji Hun Kim*
BMB Reports, 2024, 57(5):216–231 · *corresponding · the lab's first KAIST paper
↗ pubmed.ncbi.nlm.nih.gov/38627948
2023Cell

Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome

Thomas Malachowski, Keerthivasan Raanin Chandradoss, Ravi Boya, Linda Zhou, Chuanbin Su, Ashley L. Cook, Kenneth Pham, Ji Hun Kim, Spencer A. Haws, Han-Seul Ryu, Chunmin Ge, Jennifer M. Luppino, Son C. Nguyen, Katelyn R. Titus, Wanfeng Gong, Owen Wallace, Eric F. Joyce, Hao Wu, Alejandro Rojas, Jennifer E. Phillips-Cremins
Cell, 2023, 186(26):5840–5858.e36
↗ doi.org/10.1016/j.cell.2023.11.019
Postdoctoral
2021J. Human Genetics

Characterization of early postzygotic somatic mutations through multi-organ analysis

Hyeonjin Lee, Eun Na Kim, Ji-Young Lee, Ji Hun Kim, Ji-Hye Oh, Won-Kyung Kim, Eun Jeong Cho, JinYeong Lim, Sung-Min Chun, Chang Ohk Sung
Journal of Human Genetics, 2021
↗ doi.org/10.1038/s10038-021-00908-y
2019Nature Methods

LADL: light-activated dynamic looping for endogenous gene expression control

Ji Hun Kim, Mayuri Rege, Jacqueline Valeri, Margaret C. Dunagin, Aryeh Metzger, Katelyn R. Titus, Thomas G. Gilgenast, Wanfeng Gong, Jonathan A. Beagan, Arjun Raj, Jennifer E. Phillips-Cremins
Nature Methods, 2019, 16:633–639
↗ doi.org/10.1038/s41592-019-0436-5
Highlighted in Nature — Technologies to watch in 2020 Nature Reviews Genetics — Optoepigenetics for 3D genome engineering Penn Today · BRIC Notable Korean Scientist
2019Methods Mol. Biol.

Knocking in multifunctional gene tags into SMC complex subunits using gene editing

Paul Kalitsis, Tao Zhang, Ji Hun Kim, Christian F. Nielsen, Kathryn M. Marshall, Damien F. Hudson
Methods in Molecular Biology, 2019
↗ doi.org/10.1007/978-1-4939-9520-2_8
2018Methods

5C-ID: increased-resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design

Ji Hun Kim, Katelyn R. Titus, Wanfeng Gong, Jonathan A. Beagan, Zhendong Cao, Jennifer E. Phillips-Cremins
Methods, 2018, 142:39–46
↗ doi.org/10.1016/j.ymeth.2018.05.005
2016Chromosome Res.

Condensin I and II behavior in interphase nuclei and cells undergoing premature chromosome condensation

Tao Zhang, James R. Paulson, Muhammed Bakhrebah, Ji Hun Kim, Cameron Nowell, Paul Kalitsis, Damien F. Hudson
Chromosome Research, 2016, 24:243–269
↗ doi.org/10.1007/s10577-016-9519-7
2015Open Biology

3D topology of a core SMC2/SMC4 sub-complex of chicken condensin I revealed by cross-linking and molecular modeling

Helena Barysz, Ji Hun Kim, Zhuo Angel Chen, Damien F. Hudson, Juri Rappsilber, Dietlind L. Gerloff, William C. Earnshaw
Open Biology, 2015, 5:150005
↗ doi.org/10.1098/rsob.150005
Graduate school
2013Nature Comms

Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes

Ji Hun Kim, Tao Zhang, Nicholas C. Wong, Nadia Davidson, Jovana Maksimovic, Alicia Oshlack, William C. Earnshaw, Paul Kalitsis, Damien F. Hudson
Nature Communications, 2013, 4:2537
↗ doi.org/10.1038/ncomms3537
Highlighted inBRIC Notable Korean Scientist
2012J. Cell Science

Contrasting roles of condensin I and condensin II in mitotic chromosome formation

Lydia C. Green, Paul Kalitsis, Tsz M. Chang, Miri Cipetic, Ji Hun Kim, Owen Marshall, Lynne Turnbull, Cynthia B. Whitchurch, Paola Vagnarelli, Kumiko Samejima, William C. Earnshaw, K.H. Andy Choo, Damien F. Hudson
Journal of Cell Science, 2012, 125:1591–1604
↗ doi.org/10.1242/jcs.097790
2012Encyc. Life Sci.

Nucleic acid hybridization

Ji Hun Kim, Paul Kalitsis, Mark D. Pertile, Dianna Maglian, Lee Wong, K.H. Andy Choo, Damien F. Hudson
Encyclopedia of Life Sciences, Wiley, 2012
↗ doi.org/10.1002/9780470015902.a0003148.pub2
2010BMC Biochemistry

Streptavidin-Binding Peptide (SBP)-tagged SMC2 allows single-step affinity fluorescence, blotting or purification of the condensin complex

Ji Hun Kim, Tsz M. Chang, Alison N. Graham, K.H. Andy Choo, Paul Kalitsis, Damien F. Hudson
BMC Biochemistry, 2010, 11:50
↗ doi.org/10.1186/1471-2091-11-50

Author lists abbreviated for display; full records via each DOI link.

Invited commentary
2024KSMCB Webzine

3차원 후성유전체 분석법과 질병발병 기전에서의 임팩트

Ji Hun Kim · invited commentary (논단) · 3D epigenomics and its impact on disease mechanisms
KSMCB Webzine, Jun 2024 — Genomics: the Secret Code of Biology
↗ ksmcb.or.kr/webzine/2406